Monday, 16th September HUPO 2019 - 18th Human Proteome Organization World Congress

• Proteomics driven precision medicine for the early-stage hepatocellular carcinoma - Fuchu He

• The elephant in the room: glycomics and glycoproteomics - Nicolle H. Packer

Nuno Bandeira, UCSD

Peter Horvatovich, Univ. of Groningen

• Gene editing based analysis of functional protein networks in human disease - Marius Ueffing
• Proteomic Tools to Decipher Mechanisms of Senescence in Aging and Age-related Diseases - Birgit Schilling
• Spontaneous chemical modifications in long-lived proteins prevent lysosomal degradation: implications for age-related diseases - Ryan R Julian
• Proteome-wide systems genetics to interrogate metabolism - Benjamin L Parker
• Multidimensional proteomic study identifies decreased protein synthesis and increased histone 2A ubiquitylation during aging - Yaoyang Zhang
• Endurance training of human skeletal muscle results in extensive mitochondrial biogenesis and remodelling of the mitochondrial proteome - Nikeisha J Caruana

• Proteomic analysis of lysine acetylation dynamics and stoichiometry - Chuna Choudhary
• Dissecting signaling pathways using PTMomics - Martin R. Larsen
• Subcellular distribution of post-translational modifications in human proteome - Anna Andrejeva
• Systems-wide analysis of ADP-ribosylation in human cells using quantitative mass spectrometry - Michael L. Nielsen
• Rapid and site-specific deep phosphoproteome profiling by data-independent acquisition (DIA) without the need for spectral libraries - Dorte B. Bekker-Jensen
• Pathogenic mutations in ALS/FTD gene, CCNF, causes increased Lys48-ubiquitylation and defective autophagy leading to proteostasis dysfunction - Albert Lee

• A Genetic Dissection Approach to Functional Glycomics - Henrik Clausen
• Generation and Degradation of Free Oligosaccharides - Tadashi Suzuki
• Highly efficient and precise glycoproteomic analysis - Pengyuan Yang
• Glycan analysis from tissue to serum  - identification and validation of a biomarker for the early detection of hepatocellular carcinoma - Anand Mehta
•  Functional characterization of complement component C9 C-mannosylation in oesophageal adenocarcinoma - Julie Webster
• Protein paucimannosylation is an enriched N-glycosylation signature of human cancers - Sayantani Chatterjee

• Clinical evaluation of a multiplexed protein panel to discriminate patients with psoriatic arthritis from those with rheumatoid arthritis. - Stephen R Pennington
• Affinity proteomics for array based profiling of autoantibody repertoires - Peter Nilsson
• Allelic association with ankylosing spondylitis fails to correlate with HLA-B27 homodimer formation - Ralf B Schittenhelm
• Development of an autoantigen microarray for the screening of novel autoantibodies in psoriatic arthritis.   - Tianfu Wu
• HLA-B27 immunopeptidome: Understanding the connection between Salmonella typhimurium infection and ankylosing spondylitis - Terry C.C Lim Kam Sian
• ThyroProt: a robust protein classification system for thyroid disease based on deep learning of proteome data - Yaoting Sun

• Exploring farm animal proteomes, and their relevance to human health. - Emøke Bendixen
• Proteomics applied to beef productions: from the discovery of biomarkers to the development of evaluation tools - Brigitte BP Picard
• Proteome analysis of Streptococcus suis under stress conditions and in host-pathogen interaction - Denise Dittmar
• Leveraging of extensive inter-species homologies to study plasma proteomes of bovids using data-independent acquisition - Pawel Sadowski
• Proteomic profiling of crocodile spermatozoa refutes the tenet that posttesticular maturation is restricted to mammals - David A Skerrett-Byrne
• Proteomic characterisation of Ancient Egyptian skin, bones and textiles - Paul A. Haynes

• High throughput Single Cell Chemical Characterization of the Cells in the Brain - Jonathan V Sweedler
• Single cell proteome variability - Emma Lundberg
• Proteomic Cartography and Biomarkers at the Single-Cell Level: Interrogation of Premalignant and Early Stage Lesions - Sudhir Srivastava
• Integration of transcriptomics and antibody-based proteomics for spatial localization of cell type-specific expression patterns - Cecilia Lindskog
• A Offset Mass Triggered Data Acquisition Approach to Single Cell Proteomics Experiments - Christopher M Rose
• Super-resolution proteomics method to explore cell heterogeneity at single-cell level - Yu (Tom) Gao

Tadashi Yamamoto, Niigata University; Gil Omenn, U Michigan

•     The Human Protein Atlas - Implications for Human Biology, Drug Development and Precision Medicine - Mathias Uhlen

Subash Adhikari, Macquarie University

• Studies of innate immune signaling regulation through quantification of proteoforms and modeling of the TLR pathway - Aleksandra Nita-Lazar
• Value and limitations of LC-MS HLA-ligandome data for antigen discovery and vaccine development - Nicola Ternette
• Mass spectrometry– teaching us new lessons in immunity - Anthony Purcell
• Proteomic analysis of a small animal model for ricin exposure reveals underlying pathways and responses to toxicity - Julian A Hiscox
• Proteomics of laser-captured microdissected glomeruli and tubulointerstitium reveals extracellular matrix remodelling of kidney allografts with antibody-mediated rejection - Sofia Farkona
• Identification of key pro-survival proteins in isolated colonic goblet cells of Winnie, a murine model of spontaneous colitis - Richard Wilson

• The in silico human surfaceome & technologies for the elucidation of the surfaceome nanoscale organization - Bernd Wollscheid
• Protein glycosylation – an overlooked feature impacting Stem cell factor and Stem cell factor receptor function - Daniel Kolarich
• LUX-MS enables the light-controlled elucidation of ligand-receptor interactions and functional surfaceome nanoscale organization on living cells - Maik Mueller
• Quantitative Proteome Profiling of Stage I – IV colorectal carcinoma tissues and serum based extracellular vesicles for early onset biomarker detection - Christoph Krisp
• Phosphoproteomics of activity-dependent phospho-signalling in synaptosomes and cultured neurons - Mark E Graham
• SurfaceGenie: A web-based application for prioritizing cell-type specific marker candidates - Matthew Waas

• Mass spectrometry imaging applications for neurosurgery and neurooncology - Nathalie Agar
• Combined glycan and extracellular matrix protein imaging mass spectrometry workflows for FFPE prostate cancer tissues - Richard R Drake
• Imaging age-induced perturbations of mitochondrial function, neurotransmission and lipid signaling in specific brain structures - Per E. Andren
• Visualising the physiological biochemistry of human ocular lens transparency and cataract with imaging mass spectrometry - Gus Grey
• Mass Spectrometry Imaging in Cancer Diagnostics and Cancer Spheroids as Drug Testing Model - Peter Hoffmann
• Exploring the limits of high-resolution mass spectrometry imaging data - Peter P.L. Horvatovich

• Targeting respiratory viruses using structure-guided inhibitor design on glycoenzymes - Mark von Itzstein
• Systematically decoding glycosylation in disease. - Lara K. Mahal
• Synthesis of glycoconjugate vaccines and antibodies for new cancer immunotherapies - Koichi Fukase
• Stereo-selective synthesis of sialic acid containing glycoconjugates - Hiromune Ando
• Sensitive Time-Gated Immunoluminescence Detection of Glypican-1 (GPC-1) in Prostate Cancer Patients' Urine - Nima Sayyadi
• Development of gold nanoparticle-based multivalent photoaffinity probes toward exploration of carbohydrate-protein interaction - Kaori Sakurai

• Chamber and cell type specific views of the human heart glycoproteome and glycome in health and disease - Rebekah L Gundry
• Delving Deeper into the Cardiac Proteome – Analyzing the Heart “Modificome” - Melanie Y White
• Proteomic profiling of plasma lipoprotein particles as a tool to identify novel subspecies. - Stefan Lehr
• Relating high density lipoprotein (HDL) particle composition to clinical signaling capacity - Sandra Goetze
• Cross-species tissue proteomics analyses in cardiovascular disease: unraveling Ariadne’s thread - Marika Mokou
• An anatomically resolved human heart transcriptome and proteome landscapes reveal molecular signatures and disease-relevant pathways of end-stage dilated cardiomyopathy - Ling Lin

• The Central Role Of Milk Proteomics In One Health Approach - Paola Roncada
• Food safety assessment in genetically engineered canola – LC-MS/MS as an alternative to antibody-based approaches - Michelle Colgrave
• Bottoms Up Proteomics! The Dynamic Beer Proteome - Ben Schulz
• Insights in food digestion: tracking peptides from meat and meat hydrolysates by simulated gastrointestinal digestion and label-free proteomics - Evelyne Maes
• Development of an ESI-MS based serotyping assay for Salmonella - Xuezhi Bi
• Leavening it for later: Proteomics of gluten-free bread - Mitchell G. Nye-Wood

Panelists will discuss their interactions with the funding institutions and shed lights on their experience with the successful negotiation.
Panel Discussions: Rob Moritz, Ruedi Aebersold, Matthias Uhlen, Fuchu He, YM Park

• How are the scientific concepts evolved at the National Institutes of Health? - Sudhir Srivastava
• How Does Japan’s Agency for Medical Research and Development fund proteomic research? - Tesshi Yamada
• Perspectives on International Consortium on Proteogenomic: Interactions between Funders and Investigators - Henry Rodriguez
• HubMap: Partnership between the Funders and Investigators - Michael Snyder

Brian Searle, ISB

Brian Searle, ISB

Eric Deutsch, ISB

• Metastatic melanoma model system selection: implications for glyco-marker discovery - Jodie L Abrahams
• The Molecular Stethoscope: RNA of drug metabolising enzymes in circulating vesicles correlates with their specific protein content in the liver   - Brahim Achour
• System-wide characterization of esophageal squamous cell carcinoma cells by phosphoproteome analysis. - Jun Adachi
• Many multi-transmembrane domain-containing proteins can’t conform to current high-stringency MS metrics solely after tryptic digestion - Subash Adhikari
• Metabolomics Spectral Libraries for data-independent SWATH Liquid Chromatography-Mass Spectrometry Acquisition "SASA, a Novel SWATH Based Metabolomics tool" - Eman Ahmed
• Autoantibody response against tumor-associated antigens in gallbladder carcinoma using immunoproteomics approach - Javed Akhtar
• Glycan profiling on extracellular vesicles surface using evanescent-field fluorescence-assisted lectin array for biomarker discovery - Kazunari Akiyoshi
• Antibodypedia reveals trends in antibody validation - Cristina Al-Khalili Szigyarto
• SynGp one-stop shop: synthetic glycopeptides assisted glycoproteomics - Kathirvel Alagesan
• Analysis of proteome and phosphoproteome in response to higher temperatures in rice cultivars - Dalal Alonazy
• A different perspective of circulatory biomarker discovery in neurodegenerative diseases: combined use of alternative proteomics analyses to create a comprehensive “proteomics signature of the blood” - Sandra I. Anjo
• Automated quality assessment for genome-wide protein structure prediction - Brendan R. E. Ansell
• Integrated phospho-glycomics identified specific target networks of cancer stem cells - Norie Araki
• Novel sources of peptide antigens in the melanoma immunopeptidome - Ritchlynn Aranha
• Proteomics on the way to reverse Avogadro number as basis of precision medicine - Alexander Archakov
• Plasma proteomic profiling of patients with haemorrhagic fever with renal syndrome from puumala and dobrava hantavirus infections - Stuart D Armstrong
• Performance evaluation of a the new Orbitrap Exploris 480 mass spectrometer - Tabiwang N. Arrey
• Unrevealed mystery of cell dust:extracellular vesicles and tumor-derived exosomes  - Deanna Ayupova
• SWATH-MS proteomic analysis can discriminate between actinic keratosis, Bowen’s disease and cutaneous squamous cell carcinoma - Ali Azimi
• Physiological and proteomic changes to heat and water stress in soybean leaf - Mahya Bahmani
• SWATH library construction including recombinant proteins allows identification and quantification of lower abundance human plasma cancer biomarkers - Mark S. Baker
• BloodKB: an open community-scale knowledge base for plasma proteome diversity - Nuno Bandeira
• Analytical validation of run-to-run and site-to-site performance of a human immune profiling assay and automated data analysis solution for CyTOF mass cytometry technology - Dmitry Bandura
• DeepY: A deep learning model for biosimilarity evaluation of antibody drug using intact glycoproteins analysis by LC-MS - Geul Bang
• Modelling life and death in mammalian cells to generate rational engineering strategies - Craig Barry
• Dehydration-responsive nuclear proteome and phosphoproteome profiling of a grain legume chickpea (Cicer arietinum L.) - Pragya Barua
• Enhancing extracellular vesicle isolation of human plasma verified by high resolution lipidomics  - Amani Batarseh
• Powerful, standardized and versatile low-flow LCMS platform for deep dive proteomics and high-throughput analysis with maximum MS utilization - Mike Baynham
• Understanding complex post-translational modifications in CHO cells  - Aiden Beauglehole
• Establishing the proteomic profile of human neuroblastoma cells during neuronal differentiation - Fiona Bicknell
• Improved middle-down characterization of antibodies using multiple ion activation techniques and Proton Transfer Charge Reduction on an Orbitrap Eclipse mass spectrometer  - Steve Binos
• Antibody Panel Based N-glycan imaging of patient serum for cancer biomarker discovery - Alyson P Black
• Proteomic analysis of cellular secretory responses in a human lung-challenge model of tuberculosis disease - Jonathan Blackburn
• Predicting immunotherapy treatment outcomes in melanoma patients - Jonathan Blackburn
• Sub-lethal Rifampicin effects on the Mycobacterium smegmatis cell wall and on survival in macrophage infection models - Jonathan Blackburn
• Enhanced protein identification using harsh cell disruption combined with bead-based protein preparation (SP3-protocol) in a Legionella pneumophila cell culture infection model - Sascha Blankenburg
• Proteins co-ordinating cell permeability and nutrient transport in the rumen epithelium of sheep. - Jude J Bond
• Protein-based Cardiogenic Shock Patient Classifier - Eva Borràs
• Understanding the storage protein biosynthesis and protein compensation in hordein double-null barley lines using SWATH mass spectrometry - Utpal Bose
• Differential Glycosylation and Novel N-Glycan Site Analysis of ECM Proteins in Gynaecological Cancers - Matthew T Briggs
• PromarkerD as an immunoaffinity mass spectrometry assay for diabetic kidney disease - Scott Bringans
• Synaptic dysfunction investigated in clinical cohorts by immunoprecipitation/mass spectrometry. - Ann Brinkmalm
• Identification of covalently cross-linked Aβ dimers in Alzheimer's disease brain by combining top-down and bottom-up mass spectrometry - Gunnar Brinkmalm
• Proteome survey of wound fluid from non-healing wounds reveals key biological processes associated with poor healing outcomes - Daniel A Broszczak
• A polyomic approach to understand the molecular basis of virulence in Leishmania - Richard Burchmore
• Applying LC-MS/MS to provide insights into eukaryotic nitrogenase engineering - Keren Byrne
• Pulse Data Independent Acquisition (PulseDIA) on Orbitraps for deeper proteomic profiling with relatively small sample consumption - Xue Cai
• Identification of novel N-glycosylation sites from the bacterium Campylobacter jejuni - Joel Cain
• Proteomics reveals multiple phenotypes associated with N-linked glycosylation in Campylobacter jejuni - Joel Cain
• A comprehensive O-glycoprotein repository to facilitate O-glycosylation study  - Weiqian Cao
• Uncoupling the mechanisms of protein degradation - Tom TC Carew
• DCLK1: a novel promoter of gastric cancer progression - Annalisa Carli
• Monitoring Physical Healing and Psychological Wellbeing in Paediatric Burns through Proteomic Analysis of Saliva. - Morgan Carlton
• Role of NCL1 in Cysteine induced toxicity - Rahul Chakraborty
• An Orbitrap Eclipse Tribrid mass spectrometer with real time search enhances multiplexed proteome coverage and quantitation accuracy. - Zoon Chan
• AWVP: An automated workflow for variant peptide production - Ian Yi-Feng Chang
• Circadian rhythm impacts the synaptic glycosylation machinery but not the N-glycosylation signatures in mice brains - The Huong Chau
• PERCEPTRON - An Open-source GPU Accelerated Proteoform Identification Pipeline for Top-Down Proteomics - Safee Chaudhary
• Protein Biomarker Discovery for the identification of Methicillin-sensitive, heterogeneous Vancomycin-Intermediate and Vancomycin-Intermediate Staphylococcus aureus Strains by Data-Independent Acquisition Quantitative Proteomics - Chao-Jung Chen
• WinProphet: a user-friendly pipeline management system for proteomics data analysis based on Trans-Proteomic Pipeline - Ching-Tai Chen
• Scalable and Automated Plasma Workflow Based on the Thermo Scientific Q Exactive HF-X MS Platform - Emily Chen
• High-efficiency and low-cost production of pure home-brew Tn5 transposase protein and its application in the development of novel single cell resolution Next Generation Sequencing (NGS) methods. - Gary G Chen
• The Chinese immunopeptidome project and a platform for validation of naturally presented HLA-binding peptides - Lei Chen
• Proteomic and phosphoproteomic networks of Arabidopsis stomatal immune responses - Sixue Chen
• Phosphoproteomics for Identification of Activated Signalling Pathways in Breast Cancers - Yanfang Chen
• Study of plant systemic migrating proteins in response to nitrate, phosphate, and potassium deficiency using quantitative proteomics approach - Yet-Ran Chen
• Proteogenomics landscape of early-stage lung adenocarcinoma patients identifies stratification hallmarks of early onset and progression - Yi-Ju Chen
• Quantitative N-terminomic and phosphoproteomic analyses of primary neurons and rodent models of neurotoxicity reveal distinct signalling networks governing neuronal death in excitotoxicity - Heung-Chin Cheng
• Site-Specific Glycoprofiling of Recombinant Human Corticosteroid-Binding Globulin - Anastasia Chernykh
• Efficient sample preparation of human tears proteomic workflow using S-Trap™ - Jimmy Ka-Wai CHEUNG
• Profiling the membrane and secretory proteomes to discover the signaling drives the malignancy of oral cavity cancers - Lang-Ming Chi
• MUC1 glycopeptides by chemoenzymatic synthesis revealed distinct specificities of anti-MUC1 antibodies - Yasunori Chiba
• Quantitative iTRAQ-based proteomic analysis of exogenous cytokinin induced callus and protocorm-like bodies (PLBs) formation from the root tips of Vanilla planifolia - Chiew Foan Chin
• ImCal: Internal calibration curves for accurate quantitation in clinical proteomics. - Cristina Chiva
• MetaboKit: a comprehensive data processing workflow for DDA and DIA-MS data in untargeted metabolomics - Hyungwon Choi
• Social, economic and demographic correlates of drug and food consumption identified by wastewater-based epidemiology - Phil M Choi
• Proteogenomic approach to UTR peptides identification - Seunghyuk Choi
• Subcellular mapping of protein re-localisation in response to ionising radiation: A new approach to understanding DDR - Josie Christopher
• Proteomics investigation of lesion-dependent salivary proteins for OSCC monitoring - Lichieh Julie Chu
• Photothermal therapy and their mechanism of Gold nanostar in breast cancer - Young-Ho Chung
• New insights into the function and regulation of the PAQosome chaperone complex - Philippe Cloutier
• The European Bioinformatics Community (EuBIC): who are we and what do we do? - European Bioinformatics Community (EuBIC)
• Egg White as a Quality Control in Matrix-Assisted Laser Desorption/Ionisation Mass Spectrometry Imaging (MALDI-MSI) - Mark Condina
• Functional prediction of uPE1 proteins using a “guilt-by-association” approach with the CCLE dataset - Fernando J Corrales
• Plasma levels of metabolites differentiate first episode psychosis in schizophrenia and bipolar disorder patients - Alana Costa
• Genomic deletion of siat8 induces mesenchymal-to-epithelial transition in ovarian cancer cells - Cécile Cumin
• MS-CETSA for proteome-wide study of the modulation of protein interaction states - Lingyun Dai
• Defining the Campylobacter jejuni interactome by cross-linking mass spectrometry (XL-MS)  - Ashleigh L Dale
• Global proteomic and phosphoproteomic profiling to identify proteins and pathways that regulate cell survival in hypoxic conditions - Keshava K. Datta
• High-throughput proteomic analysis of spatially distinct features of human brain tissue - Simon Davis
• Controllable in vitro glycoengineering with an artificial Golgi column. - Nicholas J DeBono
• Optimizing the isolation width in Orbitrap instruments to maximize the number of label-free quantified peptides and protein. - Bernard Delanghe
• Proteomic insights into the molecular mechanisms of Alzheimer’s disease using two in vitro models: neuronal cells (SH-SY5Y) and retinal photoreceptor cells (661W) - Liting Deng
• Potential Protein Biomarkers for the diagnosis of gastric cancer - Chris Desire
• CARP promotes breast cancer metastasis via FOXO3a down-regulation - Penchatr Diskul-Na-Ayudthaya
• Improved Quantitation of HER2 by Multiple Reaction Monitoring Mass Spectrometry in Formalin-Fixed Paraffin-Embedded (FFPE) Breast Cancer Tissue - Misol Do
• Tandem Ion Mobility Coupled With Mass Spectrometry For Gas Phase Unfolding Studies - Tyren Dodgen
• Quantitative Subcellular Proteomics of the Orbitofrontal Cortex Region of Schizophrenia Patients - Gilberto B Domont
• Data-independent acquisition mass spectrometry(DIA-MS) accompanied with precursor mass assignment enhances peptide identification - Nam Dowoon
• In-situ Detection of Botulinum Neurotoxin A by MALDI Mass Spectrometry Using Functionalized Chips - Jiri DRESLER
• Novel LC MS-based strategies to detect small changes in the plasma proteome for metaproteomics studies - Jean-Jacques Dunyach
• Creating unique fragmentation in a flash:  small molecule structural elucidation using UVPD - Jean-Jacques Dunyach
• Comprehensive quantitation proteomic analysis of gray and white matter from human post-mortem brain tissue. - DUC DUONG
• In-depth TMT Quantification of native CSF by Tandem mass Tag (TMT) channel boosting. - DUC M DUONG
• Plasma thiol proteins as biomarkers of oxidative stress - Marisa Duong
• Plasma proteome profiling for the discovery of predictive biomarkers to identify Neurological Heterotopic Ossification (NHO) - Mriga Dutt
• Absolute Quantification of Apolipoproteins Following Treatment with Omega-3 Carboxylic Acids and Fenofibrate - Fredrik Edfors
• Identification of glomerular antigens in membranous glomerulopathy using laser capture microdissection, mass spectrometry and an R based data visualization tool - Ricky D Edmondson
• Quantitative glycoproteomics provides insight into regulated enzyme activity during N-glycosylation stress conditions - Danila Elango
• GPM and SRMAtlas  as novel resources for the detection and validation of missing and uncertain proteins: an update - Amr Elguoshy
• Reproducibility-optimized statistical testing for proteomics studies - Laura L Elo
• Identification and proteomic analysis of dermatophytes from human and animal dermatophytosis - Shymaa Enany
• Mitochondrial proteome analysis highlights Warburg effect and other carcinogenesis mechanism in cervical cancer - Sergio Encarnación-Guevara
• SWATH Proteomics for Human Personalized Omics Profiling (hPOP) - Kevin P Erazo Castillo
• Analysis of the digestive proteome of the invasive golden apple snail Pomacea canaliculata - Sophia Escobar-Correas
• Targeted validation and quantification of cross-links from endogenous protein complexes   - Marco Faini
• Proteomic characteristics of gastric signet ring cell carcinoma revealed via LCM-DIA-MS and the implication on the corresponding cell lines - Yang Fan
• The role of the renin-angiotensin system in the pathophysiology of chronic lung allograft dysfunction fibrosis - Sofia Farkona
• Regulation of angiotensin-II fibrotic proteins in renal proximal tubular cells - Sofia Farkona
• The Schwann cell secretome: a source of therapeutic targets for pancreatic cancer - Aysha Ferdoushi
• Serine phosphorylation of STAT3 is regulated by oxidation of an adjacent methionine in Ras-driven lung adenocarcinoma - Dilanka Fernando
• Time resolved assessment of nuclear protein complex dynamics via SEC-MS - Andrea Fossati
• Ultra-sensitive LC/MS workflow for in-depth label-free analysis of single mammalian cells with nanodroplet sample processing - Greg Foster
• Active Ageing – Predictive modeling and machine learning techniques uncover potential sets of metabolic markers for a longer life - Lena Fragner
• Deciphering tumoral biology by multipronged proteomics approaches: Novel therapeutic targets in chronic lymphocytic leukemia.  - Manuel Fuentes
• Drug repurposing approach to target DNA gyrase from Mycobacterium tuberculosis - BALASUBRAMANI G L
• Investigation of Proteome Alteration in the Cerebrospinal Fluid of Glioma and Meningioma   - Sanjeeva Srivastava
• Glycotorch: a glycoinformatics and molecular docking tool for improved modelling of glycosaminoglycan-protein complexes - Neha S Gandhi
• Elucidating cross-talk between O-GlcNAc and phosphorylation in Tau peptides - Neha S Gandhi
• Associating H₂O₂ and NO related changes in the proteome of mycobacterium smegmatis with enhanced survival in macrophages - Naadir Ganief
• RNF115 as a negative regulator of endosomal trafficking - Megan S Gant
• An informatics map for understanding rare mitochondrial disease symptomology - Anders O Garlid
• Establishing a Rapid, Sensitive QC protocol Utilizing Trapped Ion Mobility Mass Spectrometry and Parallel Accumulation Serial Fragmentation - Melvin Gay
• High speed untargeted 4D-lipidomics LC-MS/MS workflows with Parallel Accumulation Serial Fragmentation (PASEF) - Melvin Gay
• Genome Annotation of a Model Diatom Phaeodactylum tricornutum Using an Integrated Proteogenomic Pipeline - feng ge
• Quantitative redox proteomics in FLT3-ITD acute myeloid leukaemia patient samples revealed reactive oxygen species regulated oncogenic signalling, a novel treatment target. - Zacary P Germon
• Investigating the effects of high fat diet on the testicular proteome using an ion mobility enabled data independent approach - L Gethings
• Technical Reproducibility and Analytical Precision for a Multi-omic Study utilising Data Independent Strategies - Lee Gethings
• Analysis of histones from HEK293T cells using a QTOF with trapped ion mobility and PASEF workflows - Adam Rainczuk
• Integrative proteomic and phosphoproteomic study illustrates role of extracellular matrix in blast disease signaling and host immunity - Sudip Ghosh
• Defining the mechanism of action of ozonide antimalarials using untargeted metabolomics and proteomics - Carlo Giannangelo
• Proteins present in saliva participate in tooth enamel hardening in pigs - Ana Gil de Bona
• Identification of immunogenic β-lactam modified ligands in T-cell meditated penicillin hypersensitivity - Shawn Goh
• Pro-inflammatory cytokines induce immunopeptidome plasticity within Triple Negative Breast Cancer cells. - Gabriel Goncalves
• A proteomic landscape of triple-negative breast cancer - Tianqi Gong
• An efficient workflow for identification and monitoring of host cell proteins during monoclonal antibody bioprocessing - Paul N Goulding
• Assessment of hyperglycaemia-induced modifications in the kidney mitochondrial proteome of a streptozotocin-induced diabetic rat model - Cesare Granata
• Quantitative characterisation of changes in the proteome of head & neck squamous cell carcinomas under hypoxia - Yongchuan Gu
• A novel strategy for deep N-glycomics - Yudong Guan
• NQO1 is a determinant for cellular sensitivity to anti-tumor agent napabucasin - Gaigai Guo
• Insights into the proteomics of abiotic stresses in rice - Fatemeh Habibpourmehraban
• Effect of mAb carbohydrate composition on Fc:CD16a interaction - Joanna Hajduk
• Plasma protein signatures in dilated cardiomyopathy patients - Elke Hammer
• Comparison of proteomes of three species of rice from different ecological backgrounds in drought stress - Sara Hamzelou
• Proteogenomics analysis of EGFR mutations in non-small-cell lung cancer - Chia-Li Han
• Quantifying biological change in shotgun proteomics experiments using newly developed software - David CL Handler
• Evaluation and Minimization of Over-alkylation in Proteomic Sample Preparation - Piliang Hao
• Determining the specificity of an anti-PD-1 antibody using a new bead array format covering about 80% of the human proteome - Matthias Harbers
• Small-protein enrichment assay enables the rapid, unbiased quantification of over 100 low abundance factors from human plasma - Dylan J Harney
• Benchmarking PEA-Olink technology with mass spectrometry-based protein quantifications in blood plasma - Stefanie M Hauck
• The lung cancer “breathalyser”: using non-invasive breath testing for diagnosis of lung cancer - Sarah A Hayes
• The dynamic mitochondrial complexome - Juliana Heidler
• Towards personalized diagnostics via longitudinal study of the human plasma N-glycome - René Hennig
• Proteomics and immunoproteomics characterization of Staphylococcus aureus strains causing infective endocarditis - Christian Hentschker
• Immunopeptidome analysis for metastatic cancer immunotherapy - SunHee Heo
•  Proteome changes that drive acute myeloid leukemia patients to relapse  - Maria Hernandez-Valladares
• Quantifying the lipidome for respiratory disease: A rapid and comprehensive targeted approach - David Heywood
• Characterization of cancer/testis antigens in non-small-cell lung cancer using transcriptomics and antibody-based proteomics - Feria Hikmet Noraddin
• Peptidomics workflow for urine biomarker discovery - Yoshitoshi Hirao
• A resource for improved antibody validation - Andreas Hober
• Development of quantitative assay platform for multi-phosphorylated peptides using multiple reaction monitoring (MRM) method - Ji Hye Hong
• Kojak 2.0: New features for the analysis of cross-linked proteins - Michael R Hoopmann
• Quantitative proteomics analysis highlights the dynamic changes of signalling events associated with neuronal death in excitotoxicity - Ashfaqul Hoque
• Source induced dissociation (SID) with target MS2 for high throughput nanoLC-ESI-MS/MS mapping of multiple glycotopes - Cheng-Te Hsiao
• Quantitative pleural effusion proteomics reveals the drug resistance-associated and prognostic biomarkers in lung adenocarcinoma - Ting-Feng Hsiao
• Assessment of candidate biomarkers in paired saliva and plasma samples from oral cancer patients by targeted mass spectrometry - Yung-Chin Hsiao
• A novel LysargiNase- and chemical derivatization-based strategy LAACTer greatly facilitating in-depth profiling of C-terminome - Hao Hu
• An outer membrane protease OmpT based strategy for facilitated analysis of histone post translational modifications - Yajun Hu
• Phosphoproteomic Characterization of Signaling Networks Resulting from Activation of Chemokine Receptor CCR2 - Cheng Huang
• Antibody array-based quantitative proteomics platforms in biomarker discovery and development - Ruopan H Huang
• Using Reverse Phase Protein Array as a Discovery Platform for Drug Selection in Triple Negative Breast Cancer Preclinical Animal Models - Shixia Huang
• Signalling Networks in the Analysis of Phospho/Proteomic Data - Hannah Huckstep
• Scanning SWATH^® Acquisition – The Next Step in the Data Independent Acquisition (DIA) Evolution - Christie Hunter
• Accelerating DIA Studies to Extend Workflow Utility, Using Fast Microflow LC Gradients - Christie Hunter
• SAAVpedia: identification, functional annotation, and retrieval of single amino acid variants for proteogenomic interpretation - Heeyoun Hwang
• Quantitative proteomics analysis using label-free DARTS and LC-MS/MS method reveals a target protein of cancer therapeutic small molecule - Hui-Yun Hwang
• Lessons of protein functional annotation history - Ekaterina V Ilgisonis
• Utilising LC-MS/MS to identify novel T cell targets in influenza infection - Patricia Illing
• Development of water droplet in oil reaction protocol for improving tryptic peptides recovery from small-scale sample preparation - Yuma Inamori
• UniScore, a universal measure for annotated peptide product ion spectra - Yasushi Ishihama
• Biomarkers of endometriosis - Jason Ito
• High-throughput proteome analysis using 50 cm long micro pillar array (µPAC™) columns - Paul Jacobs
• Intact glycopeptide analysis by trapped ion mobility tandem mass spectrometry    - Jaran Jainhuknan
• High-throughput mass-spectrometry-based analysis of endogenous peptide-HLA I thermal stability improves the prediction of T cell epitopes - Emma C Jappe
• Mass spectrometry-based proteomics of cellular proteins of radiation exposure time - Hwangkyo Jeong
• Peroxiredoxin 6 is downregulated in platelets of first-onset psychosis - Helena P G Joaquim
• High-throughput Targeted Lipidomics Analysis of Dihydroceramide Desaturase-1 (DES1) Knockout Mice - Arianna Jones
• Improved Metabolite Identification in a Single Injection with Data Independent Acquisition for Untargeted Metabolomics Workflow - Arianna Jones
• Bead-based workflows for rapid urinary proteome profiling and simultaneous recovery of DNA, RNA and proteins for clinical proteogenomic studies - Justin Jordaan
• Serum exosomes derived from colorectal cancer patients promote cancer cell migration - Hyeryeon Jung
• Multiple Biomarker Panel to Predict Response to Tocilizumab(anti-IL6R) in Rheumatoid Arthritis Patients Using High-precision Proteomics Approach - Jinwoo Jung
• Analysis of electrostatic interaction between ganglioside GM3 and transmembrane peptide - Kazuya Kabayama
• Semisynthesis of α2,6-sialyltransferase bearing a high mannose type oligosaccharide and evaluation of glycosylation functions - Yasuhiro Kajihara
• Quantitation pipeline evaluation in the context of a multi-run TMT spike-in experiment  - Karthik Kamath
• Dried blood spot samples as a diagnostic and prognostic tool for neonatal sepsis in preterm infants - Azra Karamehmedovic
• Proteomic responses reveal signal transduction and transcription factor rearrangement to NaCl-induced salinity stress of Pistachio Rootstocks - Ramesh Katam
• Protein glycosylation in a 2D vs 3D cell culture of ovarian cancer cells - Liisa Kautto
• Elucidation of the biosynthetic mechanism of fucosylated haptoglobin - Hiromu Kawaguchi
• Proteogenomics-based identifying neoantigens in refractory cancers using xenograft mice - Takeshi Kawamura
• Promotion of proteomic data sharing through a specialized data journal - Shin Kawano
• Reliable and Deep Proteome Coverage by Gas-Phase Fractionation of Peptides with a FAIMS Pro Interface on a Novel Quadrupole Orbitrap - Markus Kellmann
• Mutations in HIV GAG Peptides and Their Effect on Cellular Immune Response in Pakistani Patients - Saeed SK Khan
• Deciphering host-pathogen-drug interactions: optimisation of antibiotic therapy - Zhi Ying Kho
• FusionPro, a versatile proteogenomic tool for identification of novel fusion transcripts and their potential translation products in cells - Chae-Yeon Kim
• Identification of cancer stem cell specific transcription factors of B7H3 using DP-MS - HanByeol Kim
• Comparative proteome analysis for three-dimensional (3D) spheroids and conventional two-dimensional (2D) cultured ovarian cancer cell revealed the differential pathway alteration - Kyunggon Kim
• A mitochondrial proteome profile indicative of type 2 diabetes mellitus in skeletal muscles - Su-Jin kim
• Combining efforts of the Russian proteomic consortium in missing proteins' mining - Olga I. Kiseleva
• The use of unique peptide-tags for sensitive detection of yeast proteome   - Keiji Kito
• Suppression of terminal modifications of N-glycans by bisecting GlcNAc - Yasuhiko Kizuka
• Proteomics for vaccine discovery: development of two potential whole protein vaccines with efficacy against Pseudomonas aeruginosa - William Klare
• Complete multi-omic physiological characterisation of clonal Pseudomonas aeruginosa adaptation to the CF lung - William Klare
• Matrix assisted laser desorption/ionization mass spectrometry imaging (MALDI MSI) for monitoring of drug response in primary cancer spheroids - Manuela Klingler-Hoffmann
• Analysis of the interaction between NF1-associated factor TCTP and translation elongation factors by cross-linking mass spectrometry coupled with affinity purification - Daiki Kobayashi
• Adipose Stem Cell Characterization - Naomi Koh Belic
• Method development for clean-up of OCT-embedded tissue samples using mixed mode SPE cartridges - Jennifer M. S. Koh
• Identification of glioblastoma-selective secreted proteins by secretome analysis of cancer cell lines - Tomohiro Kohata
• Search for novel diagnostic markers of pancreatic ductal adenocarcinoma using secretome and proteome analysis - kaori konno
• Proteomics mass spectrometry analysis reveals subclass-specific molecular aberrations within triple-negative breast cancer - Max KOSOK
• Multiplexed quantification of plasma proteins using isotopically labelled protein standards - David Kotol
• Evaluation of a tims-Q-TOF instrument for targeted proteomics - Gary Kruppa
• Physiology driven diversity in the peptidome of cow urine: A mass spectrometric view - ROHIT KUMAR
• Centrosome guides spatial activation of Rac to control cell polarization and directed cell migration - Jean-Cheng Kuo
• Novel functional proteins coded by the human genome discovered in metastases of melanoma patients - Magdalena Kuras
• Glycoproteomic changes in response to prion infection - Dominic KURIAN
• Identification of isotope clusters from mass spectra using neural network model - Daewook Kwon
• The breast cancer extracellular vesicle proteome recapitulates molecular features of the cell of origin - Rebecca E Lane
• RIAna.py facilitates analysis of stable isotope labeling mass spectrometry experiments for protein turnover quantification - Edward Lau
• Involvement of CXCL5 in thermogenic function of inguinal white adipose tissue - Dabin Lee
• Automation of in-solution digestion for large-scale clinical proteomics through Selected Reaction Monitoring Mass Spectrometry (SRM-MS) in a cost-effective way - Jihyeon Lee
• Discrimination of cancer cell types using ganglioside fingerprinting based on LC-MS/MS - Jua Lee
• Proteogenomic Characterization of Human Early-Onset Gastric Cancer - Sang-Won Lee
• Harnessing machine-learning techniques to accurately identify protein complexes and their changes based on SEC-SWATH/DIA data - Chen Li
• Temporal profiling of the diabetic and non-diabetic heart during myocardial reperfusion injury - Desmond K Li
• The effect of post-translational modifications on the molecular phenotype of the liver in type 2 diabetes - Desmond K Li
• FORECAST: a novel computational strategy Fusing Omics datasets with liteRaturE information to aCcelerAte the progress of gene annotation - Dong Li
• Suborgan proteome of honeybee workers reveals induced signal transduction in antennal lobe to drive distinct reproductive investment by alloparental care - Jianke Li
• Proteomics and Metabolomics to Predict Outcome for Pre-Disease Individuals Using Edge Biomarkers - Qing-Run Li
• Development of a sensitive and specific targeted mass spectrometry assay for proNGF - Xiang Li
• Global lipidomics reveals broad dysregulation of lipid metabolism in triple negative breast cancer development - Yan Li
• Proteomics links ubiquitin chain topology change to transcription factor activation - Yanchang Li
• UbiBrowser 2.0: expanded prediction for human proteome-wide deubiquitinase-substrate interactions - Yang Li
• The quest for the perfect tumor specific antigen - characterizing the oncogenic MHC ligandomes for novel therapeutic targets - Jennie R Lill
• Increasing the ease of use of nanoflow with plug and play low flow source - Justin Lim
• Discovery and verification of phosphoprotein signature for predicting prognosis of patients with hepatocellular carcinoma - Yu-Tsun Lin
• Quantitative proteomics reveals stage-specific protein regulation of triple negative breast cancer - Yuxiang Lin
• Analysis of the renal redox proteome in type 2 diabetes mellitus - Shivanjali J. Lingam
• PromarkerD: A novel test for predicting rapid decline in renal function in type 2 diabetes - Richard Lipscombe
• Screening of DNA aptamers toward oral cancer biomarkers using plate-based SELEX and next-generation sequencing - CHIEN-CHUN LIU
• Construction of miRNA-RNA networks underlying Taiwanese colorectal cancer for novel targets of therapy and precision medicine - Hsuan Liu
• Evaluation of tumor interstitial fluid-extraction methods for proteome analysis: comparison of biopsy elution versus centrifugation - Carolina C De La Torre Gómez