Tuesday, 17th September HUPO 2019 - 18th Human Proteome Organization World Congress

• Impact of the glycoproteome on B cell responses: From checkpoint inhibitors to HIV vaccines. - James C Paulson

Henning Hermjakob, EBI, Juan Antonio Vizcaíno, EBI

• Taiwan Cancer Proteogenomics Moonshot: Pathway to Next Generation Precision Medicine in Cancer - Yu-Ju Chen

• Characterization and turnover of RNA-binding proteins: novel insights into ribosome maintenance - Jeroen Krijgsveld
• Sugar Code Cracking of Serum Haptoglobin for the Diagnosis of Gastric Cancer by Targeted Glycoproteomic Approach - Hyun Joo An
• Integrative multi-omics analysis from minimally invasive colorectal cancer FFPE tissue - Mark P Molloy
• Understanding liver regeneration. Proteomics and phosphoproteomics analysis - Fernando Corrales
• Proteomic dynamics of colorectal cancer evolution identifies PLOD2-mediated microenvironmental regulation as a novel drug target - Kailun Xu
• Spliced epitopes are abundant and highly immunogenic components of the melanoma immunopeptidome - Pouya Faridi

• Protein TAILS Tell Remarkable Tales: Positional Proteomics Reveals Diverse N-Terminomes and Proteolytic Landscapes in Disease - Christopher M Overall
• Proteomics of Extracellular Matrix Remodeling Following Myocardial Infarction - Merry L Lindsey
• Is the mitochondrial protein processing system robust? Lessons from a combined N-terminomics and shotgun proteomics approach on human cells treated with rapamycin or zinc - Thierry Rabilloud
• Measuring protein functional states in central carbon metabolism by limited proteolysis coupled to mass spectrometry - Thomas Hauser
• Integrated TAILS terminomics, shotgun, and transcriptomics analysis of macrophage polarization and activation - Nestor Solis
• The degrading business: Measurement of proteome turnover in intact animals - Robert J Beynon

• neXtProt: a SPARQLing light in the dark human proteome - Lydie Lane
• Computational proteomics enhancements in MaxQuant by (deep) machine learning and ion mobility awareness. - Juergen Cox
• Intact N-glycopeptide database search using GPSeeker - Zhixin TIAN
• Identifying high-priority proteins across the human diseasome using semantic similarity - Maggie Pui Yu Lam
• ReScoring peptide-to-spectrum-matches based on predicted fragment ion intensities leads to an increased identification rate in metaproteomics - Tim Van Den Bossche
• Reactome Pathway Analysis and Visualization - Henning Hermjakob

• Drilling into the N-glycomes of parasites and their vectors - Katharina Paschinger
• Comprehensive characterization of protein glycosylation in Leishmania spp. - Giuseppe Palmisano
• Application of glycoproteomics to identify the plant Golgi localized UDP-GlcNAc transporter and mining the data for novel plant O-linked glycans - Joshua L Heazlewood
• Glycomic approach for detection of Enterococcus infection in chronic pancreatic diseases - Eiji Miyoshi
• Analysis of In vivo Arginine-glycosylation targets of the NleB/SseK family of effectors reveals discrete effector substrate specificities - Nichollas Scott
• Systematic chemical synthesis and immunological function of Campylobacter jejuni lipid As - Atsushi Shimoyama

• Systems-level analysis of immune development early in life - Petter Brodin
• Temporal profiles of plasma proteome during childhood development and natural progression of Type 1 Diabetes - Qibin Zhang
• Orthogonal validation of Duchenne Muscular Dystrophy biomarkers using targeted proteomics - Cristina Al-Khalili Szigyarto
• Mass spectrometry workflow for characterization of plasma proteome changes related to ageing - Valentina Siino
• The sweet separation between bacterial and viral infections by glycopeptide profiling - Esther Willems
• A comprehensive proteomic analysis of medulloblastoma subtypes reveals mechanistic insights of Group 3 tumors - Sanjeeva Srivastava

• Investigating plant derived antimicrobial peptides using “PepSAVI-MS” - Leslie M Hicks
• Mapping proteome-wide targets of protein kinases in plant stress responses - Pengcheng Wang
• Chitosan remodels Extracellular Matrix Integrity and regulate Stomatal Function leading to Immunity against Wilt disease - Subhra Chakraborty
• Elucidation of tolerant mechanism in soybean treated with plant-derived smoke under flooding stress using omics technique - Setsuko Komatsu
• Morphological and proteomics analyses of petioles rigidity in sacred Lotus - Pingfang Yang
• Molecular changes in the course of ice plant C₃ to CAM transition revealed by proteomics and metabolomics - Sixue Chen

• Proteome and proteoform diversity exposed and quantified by hybrid mass spectrometry approaches - Albert Heck

Lydie Lane, SIB

• Organelle shape and function in the context of viral infections   - Ileana M Cristea
• A multi-omics approach to drug target discovery for novel bis-triazine antimalarials                                                                                                 - Darren Creek
• Systems immunology reveals factors driving anti-viral CD8 T cell immunity - Nathan P Croft
• A Mycobacterium tuberculosis protein atlas   - Amir Banaei-Esfahani
• Spatiotemporal proteotype analysis of vaccinia virus infected cells reveals dynamic host surfaceome repopulation with viral proteins - Fabian Wendt
• Salmonella proteomic profiling during infection distinguishes the intracellular environment of host cells - Xiaoyun Liu

• PASS-DIA: A novel data-independent acquisition approach for discovery studies - Akhilesh Pandey
• Proteogenomics — connecting cancer genotype with molecular phenotype - Janne Lehtio
• Implementing ProteoGenome-Driven Oncology and Global Data Sharing - Henry Rodriguez
• Proteomic Data Commons: a resource for proteogenomic analysis - Chris R Kinsinger
• The proteogenomic landscape of curable prostate cancer - Ankit Sinha
• Mapping functional interactions of testis germ cell-specific proteins with proteogenomic assays - Andrei Drabovich

• AGS 4 - TBA - Iain Wilson
• Negotiating the labyrinth of O-glycopeptide analysis - Katalin F. Medzihradszky
• Strategic applications of data dependent and targeted multistage fragmentation in dual modes to expedite mass spectrometry-based sequencing of glycopeptides - Kay-Hooi Khoo
• Development of cancer biomarker for biliary tract cancer and pancreatic cancer with serum haptoglobin glycan analyses - Miyako Nakano
• glyXbox^CE: A powerful tool in the glycoanalytical toolbox - improving biologics development and biomarker discovery for personalized diagnostics - Erdmann Rapp
• Isoform-specific functions of polypeptide GalNAc-transferases probed with glycoengineered human skin organoids and mass spectrometry - Ieva Bagdonaite

• Proteome-Based Diagnostics: The Next Revolution in Medicine and Pathology - Michael H. Roehrl
• Enabling Precision Medicine for Alzheimer’s Disease through Biofluid-Based Biomarkers - Danni Li
• Heterogeneity study of pancreatic tumor tissue: Proteomic characterization of tumor cells obtained by laser micro-dissection (LMD), coring, and bulk sampling techniques. - Qing Kay Li
• Intra- and inter-individual variation in the proteome of high-grade serous ovarian cancer - Rosemary Balleine
• Proteomic Tissue Biomarkers for Early Prediction of Prostate Cancer Progression - Jacob Kagan
• Oxygen-sensitive interactions between glycolytic enzymes and a cancer-testis antigen established signaling scaffold are regulated by lysine acetylation - Soren Naaby Hansen

• Proteomic dissection of the plant immune system - Hirofumi Nakagami
• Quantitative analysis of protein synthesis and degradation rates in plants using progressive labeling with stable isotopes - Harvey Millar
• Systems Biology Analysis of Root Tips: Towards Bioengineering of Rice Root Structure to Enhance Drought Stress Tolerance - Ghasem Hosseini Salekdeh
• Na₂CO₃-responsive mechanism in alkaligrass revealed from redox proteomic analysis - Shaojun Dai
• Global profiling of dehydration-induced mitochondrial dynamics and defense response in rice - Niranjan Chakraborty
• Wheat pan-proteomics: Unifying data-independent LC-MS proteome measurements across diverse genetic backgrounds for trait prediction - James A. Broadbent

• Single ion mass spectrometry to measure proteoforms and their complexes with complete molecular specificity - Jared Kafader
• Novel Strategies in Top-Down Proteomics - Ying Ge
• Extending the upper mass range for top-down proteomics with proton-transfer reactions, parallel ion parking, and 21 tesla FT-ICR MS - Lissa C. Anderson
• Identification of the functional status of proteoforms and their interactomes in blood plasma - Hartmut Schlüter
• Application of a novel electron capture dissociation (ECD) mass spectrometry to top-down and bottom-up proteoform characterization on a QTOF. - Blaine R Roberts
• High-Resolution Differential Ion Mobility Separations with Orbitrap Mass Spectrometry for Middle-Down Analyses of Histone Proteoforms - Alexandre A Shvartsburg

Ferdinando Cerciello, University Hospital of Bern, Inselspital

Gil Omenn, U Michigan; Lydie Lane, SIB; Chengxin Zhang, U Michigan; Yang Zhang, U Michigan

• Profiling of intact N-linked glycopeptides in the rat brain - Jialin Liu
• Lysine Succinylome Analysis Demonstrates the Involvement of the Manganese-stabilizing Protein PsbO Succinylation in Cyanobacterial Photosynthesis Regulation - Xin Liu
• Enrichment of Lowly-Hydrophilic N- and O-glycopeptides using Ion-Pairing ZIC-HILIC-SPE - Ian Loke
• propro: a web-based and cloud computing platform for Data-Independent Acquisition Mass Spectrometry Data Interpretation and Visualization - Miaoshan Lu
• Development of lectin-based glycopeptide-enrichment approach coupled with MRM assay for verifying oral cancer candidate glycobiomarkers - Yu-Ting Lu
• Avoiding abundance bias in the functional annotation of PTM proteins - David B Lyon
• Quantitative phosphoproteomics in analysis of HipA-mediated persistence - Boris Macek
• A comparison of cartridge and bead-based sample preparation strategies for bottom-up proteome analysis of detergent-containing samples - Kent MacLean
• Proteome biomarkers for reflux aspiration in cystic fibrosis - Rosemary E Maher
• The long and short of a Genome-Wide Association Study identified long non-coding  RNA in prostate cancer - MohammedAdil Malik
• Multi-omics analysis of a nutrient transport protein required for full virulence in Campylobacter jejuni - Lok Man
• Proteomics of cotton male gametophytes: heat stress dramatically impacts the early pollen developmental stage - Farhad Masoomi-Aladizgeh
• Screening of optimal phase transfer surfactant cocktail for unbiased quantitative proteomics - Takeshi Masuda
• Comparative glycome analysis between exosomes, cell surface, and secreted glycoproteins with lectin microarray - Atsushi Matsuda
• Proteomic characterisation of treatment resistance in FLT3/MLL mutant paediatric acute myeloid leukaemia.  - Tabitha E Mclachlan
• Global analysis reveals the majority of deamidated HLA-bound peptides arise from deglycosylation via ERAD pathway - Shutao Mei
• End-to-end integration of known variants and modifications from PEFF into the Trans-Proteomic Pipeline for enriched MS/MS sequence determination - Luis Mendoza
• Pioneering translational aquaculture using proteomics - Omar Mendoza Porras
• CDDO-Im, a Nrf2 inducer targets multiple amino acid residues on proteins via novel chemical mechanisms. - Xiaoli Meng
• Illuminating the Druggable Genome: an NIH Common Fund Program - Mehdi Mesri
• Standardizing the performance of SWATH-MS software tools for label-free quantification using public repository spectral ion libraries - Mukul K. Midha
• Towards Turnkey Targeted Proteomics Solutions Using Internal Standard Triggered Acquisitions on Next Generation Orbitrap Mass Spectrometers - Ken Miller
• Simple and efficient HLAp-ligandomics by using high-field asymmetric waveform ion mobility spectrometry (FAIMS) - Yuriko MINEGISHI
• Can retina as part of the CNS unfold the common pathophysiology underlying the neurodegenerative diseases? - Mehdi Mirzaei
• Monitoring of N-linked Glycans in Endometrial Cancer - Parul Mittal
• High-throughput discovery of functional protein modifications by hotspot thermal profiling - Raymond Moellering
• Intrinsic reactivity in cell signaling: A feature not a flaw of metabolic regulation - Raymond Moellering
• Multiplexed glycan profiling of extracellular vesicles using lectin-surface enhanced raman spectroscopy (lectin-SERS) - Edward S.X. Moh
• Potential early clinical stage colorectal cancer diagnosis using a proteomics blood test panel - Abidali Mohamedali
• MHC peptidome analysis to identify and characterize cancer neo-antigens - Sonali Mohan
• Identification of serum-based biomarkers for the onset of oral cancer among tobacco users - Varshasnata Mohanty
• Quantitative proteomics reveals docosahexaenoic acid-mediated neuroprotective effects in lipopolysaccharide-stimulated microglial cells - Brian P Mooney
• Development of gold nanoparticle-based clickable photoaffinity probes for target protein identification - Kanna Mori
• High-throughput single cell proteomics analysis with nanodroplet sample processing, multiplex TMT labeling, and ultra-sensitive LC-MS - Khatereh Motamedchaboki
• Addressing throughput and detectability in targeted analysis of serum proteins - Robert Moulder
• The proteome landscape of the kingdoms of life - Johannes B. Mueller
• In-depth proteomics at a single glomerulus level in human kidneys using MALDI Imaging Mass Spectrometry and shotgun proteomics on paraffin embedded biopsy tissue section - Yume Mukasa
• Global & targeted proteomics reveal major dysregulated networks in meningiomas - Shuvolina Mukherjee
• Pathways identification by phosphoproteomic profiling identifies DNA-PK as a novel therapeutic target in Acute Myeloid Leukaemia (AML) - Heather Murray
• Insights into nanoparticles interaction with soybean and wheat at the proteomics level - Ghazala MUSTAFA
• Fast and fully automated analysis of HDX-MS data with deMix through robust peptide feature comparison - Seungjin Na
• Enhancing middle-down proteomics data analysis of heavily modified peptides - Seungjin Na
• Glycomic and glycoproteomic approaches for development of novel glyco-biomarkers of cardiac fibrogenesis using a mouse model of dilated cardiomyopathy - Chiaki Nagai-Okatani
• Chitosan remodels extracellular matrix integrity and regulate stomatal function leading to immunity against vascular wilt - Kanika Narula
• Phosphoproteomics of acute cell stressors targeting exercise signalling reveals drug interactions regulating protein secretion - Elise J Needham
• Resolving intercellular communication within the prostate cancer microenvironment through mass spectrometry-based proteomics - Elizabeth V Nguyen
• In Vitro Sialylation of Recombinant Alpha-1-Antitrypsin using α2,6 Sialyltransferase from Photobacterium Damselae Produces Disialylgalactose N-Glycans - Terry Nguyen-Khuong
• Kinetics of protein precipitation: optimizing recovery, purity, and throughput using the ProTrap XG - Jessica L. Nickerson
• Comprehensive analysis of the effects of high-fat diet on protein abundance in the mouse liver using SWATH acquisition method. - Tomoya Nishibata
• Glycoproteomic analysis of human colorectal adenoma tissue - Krishnatej Nishtala
• Proteogenomic approach to kinase regulation in osteosarcomas with different original sites: Report by ICPC JAPAN team - Rei Noguchi
• A Mix-And-Match Library Approach for Enriching Plasma Proteome Discovery - Zainab Noor
• Enhanced identification of protein ADP-ribosylation with an engineered Af1521 macro domain   - Kathrin Nowak
• MALDI imaging identifies transketolase to be up-regulated in serous ovarian cancer patients following chemotherapy-resistant disease relapse - Tannith M Noye
• Altered glycosylation of genetically engineered pigs for successful xenotransfusion using LC-MS/MS approach - Myung Jin Oh
• The Human Protein Atlas, version 19: accessing data for your research - Per Oksvold
• Progress on identifying and characterizing the human proteome: 2018-2019 metrics from the HUPO Human Proteome Project - Gil Omenn
• Quantitative, comprehensive multi-pathway signaling analysis using an optimized phosphopeptide enrichment method combined with an internal standard triggered targeted MS assay - Kay Opperman
• Tools to search, explore and interrogate your Proteomics data with UniProtKB. - Sandra Orchard
• The prognostic impact of post translational modification in childhood acute myeloid leukemia patients - Aya Osama
• Comparative Proteome Profiling of Acute Myelogenous Leukemia Cell Lines under acute and chronic starvation condition - Aya Osama
• A complementary peptide enrichment and mass spectrometric strategy for in-depth mining of immunopeptidome - Kirti Pandey
• Chemical modification of proteins to mimic LysC proteolysis: Application of 1,2-dicarbonyl compounds for arginine modification - Boomathi P Pandi
• Analytical guidelines for co-fractionation mass spectrometry obtained through global profiling of gold standard Saccharomyces cerevisiae protein complexes - Chi Nam Ignatius Pang
• High-throughput automated sample preparation workflow for extensive pan-species repository and SWATH-mass spectrometry - Selvam Paramasivan
• Precise Identification of Site-Specific Glycoproteins using Multiple Fragmentation in Mass Spectrometry with GlycoProteome Analyzer (GPA) - GunWook Park
• Temporal Proteomic Alterations in Mouse Brain during the Recovery Phase of Traumatic Brain Injury (TBI) - Joonho Park
• Identification of misannotated COSMIC mutations based on the combination of AMP guideline and multiple public databases - Kyoung-Jin Park
• Multi-omics characterization of never-smoking lung cancer patients without known driver mutations - Seung-Jin Park
• NanoBlow: A simple device to limit contaminants during nanoLC-MS - Benjamin L Parker
• Burn wound blister fluid proteomics to assist with early clinical decision making - Tony J Parker
• Batch normalisation and mixed effects models in TMT or SWATH – two sides of the same coin - Dana Pascovici
• Metabolomic/lipidomic DESI imaging of different cell cultures - Heather Patsiouras
• Unified access to cancer proteogenomics data - Samuel H Payne
• Discovering metabolic alterations in glial tumors using a combination of ambient MS profiling and nanoLC/MS - Stanislav Pekov
• Glycoproteomic measurement of site-specific polysialylation - Ruby Pelingon
• Proteomics of triacylglycerol accumulation and DGAT inhibition in HepG2 cells   - Lifeng Peng
• Advancing high-throughput top-down analysis of proteoforms up to 60 kDa using an Orbitrap Eclipse Tribrid mass spectrometer - Scott Peterman
• Software for automation of MS/MS glycoproteomic analysis - Toan K Phung
• Hands-off: fully automated & TMT-compatible sample preparation on the PreON liquid handling platform employing the iST-NHS workflow - Garwin Pichler
• In-situ exploration of lipid composition remodeling using sperm maturation in the rat epididymis by MALDI mass spectrometry imaging - Charles Pineau
• Precision, personalized and digital medicine: research trends over the past 10 years - Elena A. Ponomarenko
• CPPD – a rapid proteolytic method enables complete protein sequence coverage in bottom-up proteomics - Terence Chuen Wai POON
• AD and MCI associated changes in blood plasma proteome studied  by high resolution mass spectrometry - Igor Popov
• The study of human plasma proteome changes under the influence of spaceflight factors - Igor A Popov
• MetaNovo: a probabilistic pipeline for peptide and polymorphism discovery in complex mass spectrometry datasets - Matthys MG Potgieter
• A multi-instrument, longitudinal assessment of high-throughput proteomics using 1,560 SWATH-MS profiles from standardised cancer tissue samples - Rebecca C Poulos
• Focus on Gene Editing for human protein annotation - Ekaterina Poverennaya
• Cellular Thermal Shift Assay (CETSA): From drug targets to horizontal cell biology - Nayana Prabhu
• Nuclear signaling and CHO proteome altered after retinoic acid and sodium butyrate treatment - Antonia Pries
• Systematic analysis of nuclear deubiquitylases – insight into BRCC3-regulated signaling - Gabriela Prus
• The Impact of Asialylated Glycoproteins in Coronary Artery Disease. - Benjamin J Pullen
• The age-dependent proteome landscape of platelet in healthy population - Da Qi
• Impact of proteomic analyses for understanding cellular responses to nanoparticles: toward mechanistic data and evidence for cross-toxic effects - Thierry Rabilloud
• About the noisiness and predictive value of proteomic data : lessons from enzymes - Thierry Rabilloud
• Breast implant capsular contracture reveals changes in the regulation of low-abundance plasma proteins using TMT-based quantitative MS - Md Arifur Rahman
• Exosomes derived from human primary and metastatic colorectal cancer cells contribute to functional heterogeneity of activated fibroblasts by reprogramming their proteome - Alin Rai
• Turnover optimized short nanoLC gradients on a tims equipped QTOF for high throughput and deep proteome measurements - Adam Rainczuk
• Exploiting 4D in Omics: Mass Offset Mobility Aligned (MOMA) and Mass Aligned Mobility Offset (MAMO) of Biological Analytes - Adam Rainczuk
• Orthogonal evidence for Olfactory Receptors can be used for agonist prediction - Shoba Ranganathan
• Multifactorial omics platforms for studying Alzheimer's disease olfactory cells - Laura Rantanen
• Dehydration-responsive multi-omics landscape of grasspea: novel findings and unique insights into abiotic stress tolerance - Divya Ms. Rathi
• Comprehensive dog plasma spectral libraries for SWATH-MS Data Acquisition - Halley Ravuri
• An alternative strategy to explore missing proteins with low molecular weight - yan ren
• An optimization towards post-search process to improve the identification of HLA-associated peptides - Zhe Ren
• Development of Integrative Protein and Lipid Organelle Profiling (iPLOP) method for high throughput organelle analysis - Harley R Robinson
• Post-translational modifications on recombinant human factor IX from fed-batch and perfusion chinese hamster ovary cell culture - Dinora Roche Recinos
• Welfare Biomarkers For Farmed Gilthead Sea Bream (Sparus Aurata): Integrating Multi-Omics Data - Pedro M Rodrigues
• Proteomic profiling identifies novel pathways modulated by repurposed drug candidate Nitroxoline in AsPC-1 pancreatic cancer cells - Maurizio Ronci
• Cellular Imprinting Proteomics applied to ocular disorders elicited by Congenital Zika virus Syndrome - Livia Rosa Fernandes
• Fast and accurate bacterial identification in clinical samples by MS-DIA crude signal mining using Machine Learning: application to Urinary Tract Infections - Florence Roux-Dalvai
• Quantitative proteomics for studying the effect of lysine succinylation on aflatoxin production in Aspergillus flavus - Hu Rui
• Serum profiling using NAPPA reveals an autoantibody signature for the early diagnosis of knee osteoarthritis: Data from the Osteoarthritis Initiative - Cristina Ruiz-Romero
• Development of sandwich antibody microarrays to validate a panel of potential protein biomarkers of osteoarthritis - Cristina Ruiz-Romero
• Ion chromatography coupled with mass spectrometry (IC-MS): an innovative tool for the characterization of the sulfated O-linked glycans - Neil G Rumachik
• Structural Basis For DNA Recognition And Transcription Activation By The Response Regulator OmpR - Sushant Sadotra
• ProTargetMiner: a proteome signature library of anticancer molecules for functional discovery - Amir Ata Saei
• Chondroitin sulfate and heparan sulfate determine axonal regeneration and its inhibition through PTPRσ-Cortactin-Autophagy axis - Kazuma Sakamoto
• Detection of ultra-low abundant epitopes by targeted mass spectrometry - Mogjib Salek
• High-Throughput Discovery and Validation of Post-Translational Modifications on HLA-Presented Peptides from Patient Tumor Samples - Robert Salzler
• Proteomics and metabolomics analysis of PBMCs from first-episode psychosis patients - Cátia Santa
• SWATH-MS based proteomics enabled studying the semen quality in Brahman bulls - Nana Satake
• MS-based single-cell proteomic screening for oocyte quality during in vitro production a reality? - Nana Satake
• Proteomic analysis of murine alveolar-like macrophages infected with wild-type Mycobacterium bovis BCG - Darien T Schell
• Media dependent proteomic composition of CHO cells affecting IGF-signaling - Louise Schelletter
• Quantitative elution of biotinylated peptides and proteins from streptavidin complexes - Martina Schnölzer
• Unconventional epitope discovery: a novel bioinformatics workflow for immunopeptidogenomics - Katherine E Scull
• Generating high-quality chromatogram libraries for DIA-MS with empirically corrected peptide predictions - Brian C Searle
• Isomer-Specific Quantitation of Serum Acidic N-Glycans for Behcet’s Disease Screening - Nari Seo
• The role of upstream phosphorylation in the regulation of histone methylation - Ryan J Separovich
• LFQ-Analyst: An easy-to-use interactive web-platform to analyze and visualize quantitative proteomics data - Anup D. Shah
• Developing a mass spectrometry-based immunopeptidomics platform to analyze thermostability profiles of peptides bound to HLA class I molecules - Mohammad Shahbazy
• Identifying neoantigens with LC-MS by personalized de novo peptide sequencing - Baozhen (Paul) Shan
• Novel Method for Proteome-scale Analysis of Protein Substrates and Modification Sites of Small Ubiquitin-like Modifier - Yichu Shan
• Comparative analysis of mRNA and protein degradation in prostate tissues indicates high stability of proteins - Wenguang Shao
• CRCprot: a novel and practical protein-based classification system for CRC prognosis using FFPE biopsy tissues - Yingkuan Shao
• The interactome map of the chromatin organising protein CTCF - Mehdi M Sharifi Tabar
• Problems to be solved for more accurate SWATH analysis - SHUICHIRO SHIMADA
• Quantitative proteomic analysis of breast cancer formalin-fixed paraffin-embedded(FFPE) tissue proteins associated with distant metastasis. - Dongyoon Shin
• Multiplexed immuno N-terminomics Enables Time-resolved Profiling of Protein Degradation - Sanghee Shin
• Peptidomics and metabolomics approach to elucidate the proteolytic regulation of haemoglobin peptides within the malaria parasite - Ghizal Siddiqui
• Proteomics identification of radiation-induced changes of membrane proteins in the rat model of arteriovenous malformation in pursuit of targets for brain AVM molecular therapy   - Margaret Simonian
• PiRT: cross-species retention time calibrants for plasma samples - Manika Singh
• Differential protein expression in Pelistega indica under anaerobic vs aerobic conditions - Rakesh Singh
• Multi-omics analyses reveal temporally distinct metabolic switches, carbon-nitrogen partitioning and oxidative signaling in chickpea seed - Arunima Sinha
• A new brain-centric atlas with expression maps in human, pig and mouse brain. - Evelina Sjöstedt
• Size exclusion chromatography protein correlation profiling paired with crosslinking mass spectrometry for enhanced identification of yeast protein-protein interactions - Daniela-Lee Smith
• Adapting EasyPep^TM MS Sample Preparation and TMT labeling for 96-well Automated Liquid Handling Systems - Sergei Snovida
• Proteomic approaches in biomarker panel to diagnose mental illness: focus on major depression disorder, bipolar disorder, schizophrenia - Areum Sohn
• viQC: Visual And Intuitive Data Quality Control For Bottom-Up Proteomics - Elizaveta Solovyeva
• Plasma proteome profiling to detect novel biomarkers for cholangiocarcinoma - Chantragan Srisomsap
• Proteogenomic study of vitronectin in breast cancer - Meera Srivastava
• Digging deeper in every direction: developing a next-generation platform for high-throughput multi-faceted protein characterization - KRISTINA SRZENTIC
• An extracellular proteomics approach to understand the wheat phosphate starvation response at the plant-soil interface - Christiana Staudinger
• Proteomic mapping of chemical warfare agent exposed plasma - Joel R Steele
• Mapping hydroxylated tyrosine in the human brain proteome: The formation and incorporation of L-DOPA - Joel R Steele
• The neurotoxin β-Methylamino-L-alanine and it's incorporation into proteins - Joel R Steele
• Developing a robust proteomics workflow to unlock archival FFPE colorectal cancer tissue cohorts for biomarker discovery - Pascal Steffen
• Aging in testis: proteome alterations in senescent testicular peritubular cells - Jan Bernd Stöckl
• Real-time, high density monitoring of pTyr signaling targets in human tumors using SureQuant heavy peptide triggered targeted quantitation - Lauren E Stopfer
• Development of a fully automated magnetic workflow for phosphoproteome profiling - Stoyan Stoychev
• Loss of protein N-glycosylation influences peptidoglycan structure in Campylobacter jejuni  - Zeynep Sumer-Bayraktar
• Discovery and Multi-center Verification of Prostate Cancer Protein Biomarkers using Single-shot Short Gradient Microflow Scanning SWATH and MRM^HR Mass Spectrometry - Rui Sun
• Statistical Characterization of Peptide Fragmentation Behaviors in the Negative Ion Mode Using High-Resolution Mass Spectrometry - Rui-Xiang Sun
• SimPhospho 2: phosphorylation site validation in multiply phosphorylated peptides using simulated spectral libraries - Veronika Suni
• DIAtools: Metaproteomics by data-independent acquisition mass spectrometry - Tomi Suomi
• Development of gold nanoparticle-based affinity labeling probes for identification of carbohydrate-binding proteins - Nanako Suto
• Role of Cytoskeleton Proteins in Trans-Endothelial Permeability: An In Vitro Model for Endothelial Dysfunction in Dengue Virus Infection - Aroonroong Suttitheptumrong
• Proteomic profiling reveals key cancer progression modulators in shed microvesicles released from isogenic human primary and metastatic colorectal cancer cell lines - Wittaya WS Suwakulsiri
• Proteome and phosphoproteome changes during left ventricular dysfunction in post-myocardial infarction - Hannah LF Swa
• Discovering the N-linked glycome of the important zoonotic parasite Fasciola - Jaclyn Swan
• Comprehensive profiling of neural retina proteins in C57BL/6 mouse with S-Trap and high-pH peptide fractionation by mass spectrometry - Ying Hon Sze
• Cys-DIA – Cysteine specific DIA increase the proteome coverage - Muhammad Tahir
• In the lupin: Exploring solvent extraction methods for characterising lupin allergens by LC-MS - Arineh Tahmasian
• Assessment of drug-associated HLA antigens involved in co-amoxiclav induced liver injury. - Arun A Tailor
• The advanced immuno-MS work flow for serum biomarker quantification using the antibody-immobilizing magnetic beads - Yoshio Takahata
• Proteome-wide analysis of USP14 substrates revealed its role in hepatosteatosis via stabilization of FASN - Minjia Tan
• SWATH-MS reveals functional differences between glycogenin 1 and 2 in yeast metabolism - Xinle Tan
• Mass++ ver.4: an open-source, simple and extensible MS data viewer - Satoshi Tanaka
• Glycosylation of N-Glycan Branching: Implications for Disease Onset, Biomarker and Therapeutics - Naoyuki Taniguchi
• Defining the protein N- and O-glycosylation associated with human monocyte-to-macrophage transition - Morten Thaysen-Andersen
• Exendin-4 protects pancreatic BTC-6 cells against metabolic stress: a proteomic study - Ali Tiss
• Unusual Site- and Granule-Specific N-Glycosylation of Human Myeloperoxidase from Resting Neutrophils - Harry Tjondro
• Immunomodulation of  N-glycolylneuraminic Acid  Glycans Using Nanotechnology Platform - Suraj Toraskar
• Integrating MALDI Imaging Mass Spectrometry with shotgun proteomics for the studies of neuropathology of Alzheimer's disease - Yumiko Toyama
• Quantification of histone proteoforms through top-down proteomics - Denise P Tran
• Direct Oligosaccharide Profiling using Thin-Layer Chromatography Coupled with Ionic Liquid-Stabilized Nanomatrix-Assisted Laser Desorption-Ionization Mass Spectrometry - Mei-chun Tseng
• Imaging Mass Spectrometry of the kidneys from autoimmune type I diabetes rat model - Konomi Uchida
• Multisialylated LacdiNAc structures on PSA (PSA G-Index^®) as a highly specificity-enhanced secondary biomarker for prostate cancer - Koji Ueda
• Deciphering the biosynthesis of paucimannosidic proteins in human neutrophils - Julian Ugonotti
• Calculating well-adjusted spectrum e-values using cloud approaches - Julian Uszkoreit
• Targeted mass spectrometry quantification of IFN-γ induced ADP/ATP translocase 2 suppression related to cancer cell metabolism - Marie Vajrychova
• Proteomic analysis of drug metabolising enzymes in extracellular vesicles   - Madelé Dr van Dyk
• Exercise induced muscle fatigue and damage- in search of a diagnostic biomarker - Jessica van Haeften
• Proteins contained in outer membrane vesicles produced by Rhizobium etli grown in the presence of the nod gene inducer naringenin - María del Carmen Vargas-Lagunas
• The immunoglobulin superfamily receptome reveals novel functional and cancer-associated networks - erik verschueren
• SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization. - Mattias Vesterlund
• Triglyceride-Based Nanodroplets and Their Interaction with Lipid-Specific Proteins - Valerija Vezočnik
• Evaluation of FAIMS technology for mass spec analysis of chemical cross-linked peptides. - Rosa Viner
• An integrated atlas of protein expression in human cancer based on public proteomics data - Juan Antonio Vizcaino
• Comprehensive proteome analysis of the plant pathogen Xanthomonas campestris pv. campestris with focus on virulence - Julia Voß
• Cell membrane transporters facilitate the accumulation of drug-protein antigens, generating a localized pool of MHC epitopes associated with drug-induced liver injury - James C Waddington
• iHPDM: in silico human proteome digestion map with proteolytic peptide analysis and graphical visualizations - Jen-hung Wang
• SIRT5 contributes to colorectal cancer growth by regulating T cell activity - KE WANG
• A time-resolved multi-omic atlas of the developing mouse liver - Yi Wang
• Understanding the information content in proteomic profiles of late pleistocene to iron age humans from the tropics - Valerie C Wasinger
• Network analysis of proteogenomics data in lung cancer cell lines - Yu Watanabe
• Phosphoproteome profiling of isogenic cancer cell-derived exosome reveals HSP90 as a potential marker for human cholangiocarcinoma - Churat Weeraphan
• Development of a highly sensitive lectin suspension microarray system for profiling glycans in serum glycopeptidome from patients with intrahepatic cholangiocarcinoma - Liming Wei
• Non-enzymatic oxidative post-translational modifications in peptides – Key to understand the functional consequences of cold atmospheric plasma (CAP) - Sebastian Wenske
• N-linked glycan branching and fucosylation are increased directly in hepatocellular carcinoma tissue as determined through in situ glycan imaging and are associated with poor outcome - Connor A West
• Samples to features to enrichment - Rapid and interactive visualization of proteogenomics data - Jakob Willforss
• A fast and universal sample preparation proteomic workflow for cancer biopsies sourced from different embedding methods - Steven G Williams
• SiTrap: rapid and high throughput clinical multiomics - John P Wilson
• Determination of total plasma Coenzyme Q10 by liquid chromatography-tandem mass spectrometry to help diagnosis to possible mitochondrial disorder. - Yi Ling Wong
• Characteristics of MALDI-imaging on a new dual ion source QTOF with TIMS separation - Lucy Woods
• High throughput plasma proteomics with PASEF and 4D feature alignment - Lucy Woods
• Sexual dimorphism and epileptogenesis in developing and adult rat brains - Merridee A Wouters
• Biological implications of gene modularisation in the virus φX174 - Bradley W Wright
• Discovery of new human protein coding genes in GENCODE using evolutionary signatures and mass spectrometry - James C Wright
• Discovery of salivary biomarkers for oral cancer by lectin affinity capture coupled with iTRAQ-based quantitative glycoproteomics approach - Chia-Chun Wu
• A rapid and highly selective method for N-glycopeptide enrichment by bacterial cellulose - Mengxi Wu
• Comprehensive proteomic analysis of kidney biopsy tissues for prediction of prognosis and response to therapy in IgA nephropathy - Qingqing Wu
• Differential oxidation of protein tyrosine phosphatases in metabolic diseases - Wei Wu
• Glycopeptidomics Analysis of a Cell Line Model Revealing Potential Marker Molecules for the Early Diagnosis of Gastric MALT Lymphoma - Di Xiao
• Multilayered N-glycoproteomes reveals generally impaired N-glycosylation promoting Alzheimer’s disease - Juanjuan Xie
• Changes in the Insolublome with Aging and Alzheimer’s Disease models - Xueshu Xie
• Distinguishing pancreatic cancer from benign diseases and healthy individuals by mass spectrometry-based metabolomic pipeline - Yueting Xiong
• Urine Proteomics of Japanese Child and Adult Healthy Volunteers by SWATH-MS analysis - Bo Xu
• Characterization of Protein Profile and Lysine Methylation in EZH2 Wild-Type and Mutant Hematologic Cell Lines - junyu xu
• Surfaceome of Exosomes Secreted from the ColorectalCancer Cell Line SW480: Peripheral and Integral MembraneProteins Analyzed by Proteolysis and TX114 - Rong Xu
• Proteomic analysis of  low numbers of Hela cells using a microfluidic device - Peng Xue
• Short gradient time LC-MS for clinical application to analysis of multiple samples - Keiko Yamamoto
• Proteomics of FFPE kidney biopsy tissues of chronic kidney disease (CKD) for precision medicine - Tadashi Yamamoto
• Integrated transcriptomic and proteomic analyses reveal novel immune regulators in pneumonia - Chia-Yu Yang
• Discovery of putative drug resistance markers of MCF-7/ADR cells using GPSeeker-enabled quantitative structural N-glycoproteomics - Hailun Yang
• Proteogenomic analysis of cetuximab-resistant clonal populations derived from colorectal cancer cells - SEOJIN YANG
• Prediction of tandem mass spectra and retention time of peptide by deep learning - Yi Yang
• Comparative proteomic analysis reveals cellular response to ionizing radiation exposure in bone marrow of mice - Jeonghun 1 Yeom
• Peptide end sequence information in HCD spectra for protein identification - Akiyasu C. Yoshizawa
• Identification of isoaspartylated peptides by electron-transfer/higher-energy collision dissociation - Clifford Young
• MSFragger fast and sensitive peptide identification in diverse proteomic datasets - Fengchao Yu
• BRAF protein immunoprecipitation, elution, and digestion from cell extract using a microfluidic mixer for mutant BRAF protein quantification by mass spectrometry - Jau-Song Yu
• Immunoproteomics approach to discover immunogenic SFTS virus antigen for vaccine and diagnostic kit development  - Jiyoung Yu
• LIN28A interactome analysis illustrates its diverse gene regulatory functions - Nam-Kyung Yu
• In-depth serum proteomics reveals biomarkers of psoriasis severity and response to traditional Chinese medicine - Xiaobo Yu
• Fully Automated Protein Absolute Quantification Platform for Simultaneous Analysis of Multiple Tumor Markers in Human Plasma - Huiming Yuan
• Multistage Native MS Enables Direct Identification of Unknown Ligands Bound to Protein Assemblies  - Vlad Zabrouskov
• Differential Plasma Proteomic Analysis of ß-thalassemia patients in response to Hydroxyurea treatment - Shamshad Zarina
• Structural characterizations of intact monoclonal antibodies by native MS - Martin Zeller
• PhosMap: a comprehensive R package for analysing quantitative phosphoproteomics data - Dongdong Zhan
• Quantitative proteomics, a missing part of proteomic research - jiandi Zhang
• The new strategy for co-immunoprecipitation procedure to improve protein-protein interaction study - Keren Zhang
• 20S Proteasome Complex Structure Conformation and Dynamics Study by Hydrogen Deuterium Exchange Mass Spectrometry - terry zhang
• Early changes in the urine proteome in a rat liver tumor model - Yameng Zhang
• Large Scale Preoteome Study on Peritoneal Dialysis Effluent Exosomes - Yi Zhang
• A combination approach to explore the missing proteins at low abundance with higher hydrophobicity and lower molecular weight  - yuanliang zhang
• A urinary metabolomics study of colorectal cancer diagnosis and metastasis markers - Xiaohang Zhao
• An integrated MS data processing strategy for fast identification, in-depth and reproducible quantification of protein O-glycosylation in large cohorts of human urine samples - Xinyuan Zhao
• A circulating exosomes-based novel screening tool for colorectal cancer revealed by Shotgun and Data Independent Acquisition mass spectrometry - Xi Zheng
• Coupling subcellular fractionation and basic reverse phase chromatography to achieve improved proteomic coverage - Rebekah Ziegman
• Investigating Pierce’s Disease Tolerance mechanism in Grape using Shotgun Proteomics - Sedigheh Shokri

Tara K Bartolec, University Of New South Wales, Australia
Sayantani Chatterjee, Macquarie University, Australia
Mohamed Elzek, Univesity of Cambridge, United Kingdom
Komal K Mandal, University of Southern Denmark, Odense, Denmark
Maik Mueller, ETH Zurich, Switzerland
Ruzanna Mnatsakanyan, Segal Cancer Proteomics Centre, Canada
Tomoya Niinae, Kyoto University, Japan
Tim Van Den Bossche, VIB - UGent Center for Medical Biotechnology, Belgium